PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233131.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 602aa    MW: 66065.9 Da    PI: 6.0605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233131.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-13431477455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  XP_008233131.1 431 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 477
                     799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-5353241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-18430491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.43E-15430481No hitNo description
Gene3DG3DSA:4.10.280.104.5E-18431490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10431477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKIEMGLGGG VWNDGDKAMV AAVLGTRAFD YLISSSVSSN ENSCMGIGTD ENLHNKLSDL  60
VEPPNVSNFS WNYAIFWQIS RSKSGDWALC WGDGSCREPK EGEESEATRN LNLRLEDETQ  120
QTMRKIVLQK LHTLFGSSDE YNGALGLDRV TDTEMFLLAS MYFSFPRGEG GPGKCFASGK  180
HVWLSDLLKL ESDYCVRSFL AKSAGVQTIV LVPTDVGVVE LGSVRCVGES LELLQSIRSL  240
FSTQSSLMRS KPLTGFPVMG KRRDENAQLT NLSPVERGEG VPKIFGQDLN SGNSGRPRYR  300
EKLAVRKVEE RPWDVYSNGN RIAFSSPRNG IQGSSWPHIH DAKQGSPTEM YASQSPVNNI  360
QELVNGARDD FRLNHYQPQK QVPIQIDFSG ATSRPSVVAR PVGADSENSD AEAPCKEXGR  420
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYINELQAKL  480
KVMEADRENL GGTSRDASAL GANPGISMEN QSQATDVDIQ AVHDEVVVRV SCPLDSHPAS  540
RVIQAFKEAQ ITVVESKLAA ANDTVFHTFV IKSQGSEPLT KEKLIAAFSR ESNSLQSLSS  600
VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-22502426193Transcription factor MYC3
4rqw_B3e-22502426193Transcription factor MYC3
4rs9_A3e-22502426193Transcription factor MYC3
4yz6_A3e-22502426193Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2598480.0KR259848.1 Prunus avium cultivar Tieton bHLH transcription factor (bHLH13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233131.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH13-like
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLM5XIR60.0M5XIR6_PRUPE; Uncharacterized protein
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein